PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g00830.1
Common NameLR48_Vigan02g247900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 352aa    MW: 38979 Da    PI: 4.5052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g00830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17118166254
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     +y+GVr++k +g+W+AeIrd +     + +r++lg+f taeeA +a++a r+++e
  Vang06g00830.1 118 KYRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASQAYEARRLEFE 166
                     8*******9.**********55.....45********************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-11118167IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-16118165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-21118167IPR001471AP2/ERF domain
SMARTSM003803.4E-17118181IPR001471AP2/ERF domain
CDDcd000182.43E-23118165No hitNo description
PROSITE profilePS5103219.941118178IPR001471AP2/ERF domain
PRINTSPR003678.9E-11119130IPR001471AP2/ERF domain
PRINTSPR003678.9E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPESRKQLTF KPRQKPHHSV QESKAMRKLR IIYNDPDATD SSDDESEVFQ KSKKARRNFC  60
EIPLPPLPQT FTTPETNSFE VNSNSNAVRV KVCIEGQPQT KKRVLTQTPS TRRNTSGKYR  120
GVRQRKWGKW AAEIRDPFQS TRIWLGTFNT AEEASQAYEA RRLEFEAKAK ARAYKNVSEP  180
LSTTSDKSIC CNSSDAAAVS VSEKFSTTSD DSDGVLSHPS PSSVLELDSS SSKPIDNDNG  240
LSEEAVETNN LVSEFAELEI PDLSLLNLPS PFIGATAGLA SGTEPDFGID FDWLSLEDYG  300
QGFDDFGGLE DIRICGFDNN EPSKLPDFDF GDFCAEEFAG WTEEPLNIPC A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510959.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A0S3SLN90.0A0A0S3SLN9_PHAAN; Uncharacterized protein
TrEMBLA0A0L9U1N50.0A0A0L9U1N5_PHAAN; Uncharacterized protein
STRINGGLYMA20G24920.21e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-37ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]